Talk:Omics

This article was nominated for deletion on 6 December 2007. The result of the discussion was Keep.

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Broken link

Removed Omics.org — The -omics wiki from links as it opens a blank page. --apers0n 07:54, 4 August 2006 (UTC)[reply]

Merge proposal

(was Merge -ome?) Would -ome be better off merged here, since this has plenty of content already? My impression is that most -omes will have an -omics, and vice versa. - IMSoP 22:51, 19 November 2006 (UTC)[reply]

Yes! There is no reason at all to have separate pages for omics and omes. Any ome will have a corresponding omics. Fences and windows (talk) 11:13, 8 July 2008 (UTC)[reply]

Good idea 129.215.113.37 (talk) 17:18, 21 July 2008 (UTC)[reply]

Pseudo-omics and Nonsensomics

The statement "For example, translationomics does not have any distincive value at the moment while it should correspond to transcriptomics." is wrong and should be removed. There are a lot of DNA sequences which are transcribed but do not code for proteins (e.g. siRNAs, miRNAs, snoRNAs). Thus the translationome doesn't correspond to the transcriptome.

--84.75.156.125 22:30, 1 March 2007 (UTC)[reply]

POV, Original research and unsourced statements

This article contains many statements with strong claims of "firsts", "early" events and so on. Much of it is not sourced and seems to present POV original research. I've tagged a good deal of what needs to be fixed, but overall, I don't think the article makes a strong enough case even for the idea that omics is a word (as opposed to the ending -omics). -Harmil 15:30, 10 April 2007 (UTC)[reply]

Heavy edit

This page was full of unreferenced statements, speculation, waffle and was badly written and organised. I have slashed through it with a machete - hopefully it actually reads well now, and the excess content has been removed. Fences and windows (talk) 11:10, 8 July 2008 (UTC)[reply]

Alternative explanation and related suffix

Since reference 2 is a link to a database, it's hard to verify that it really rules out the proposed meaning of the suffix. One example of -ome indicating something related to "collection of" is rhizome which the dictionaries state was a word first used in 1845 and derived from the greek word rhizōma meaning "mass of tree roots". It depends on rhizoun meaning "cause to strike root" and rhiza meaning "root".

In any case, the omics-issue has a possible parallell in the use of the -oma suffix in medicine [1]. It is claimed that it was derived in a similar way from the word carcinoma. The pages on helkôma [2] and helkos [3] may offer some further clues to someone more versed in grammar than myself. :-) 11:15, 15 October 2008 (UTC) —Preceding unsigned comment added by EverGreg (talk • contribs)

Requested move

The following discussion is an archived discussion of the proposal. Please do not modify it. Subsequent comments should be made in a new section on the talk page. No further edits should be made to this section.

The result of the proposal was support for move. Note that the question of deletion, as raised below, is beyond the scope of the RM process.--Fuhghettaboutit (talk) 03:02, 10 September 2009 (UTC)[reply]

-omics → Omics — The sources referenced and some of the external links use the spelling Omics. This spelling is in line with Wikipedia naming conventions, which generally discourage non-alphanumeric characters and prefer initial capital letters. It also draws attention to the phenomenon among biologists, as opposed to discussing the suffix as a suffix. (That is already handled at Wiktionary.) Omics is currently a redirect to -omics. Cnilep (talk) 17:12, 1 September 2009 (UTC)[reply]

Support per nom. Well said.
— V = I * R (talk to Ω) 04:46, 2 September 2009 (UTC)[reply]
support, from me too. Also, we need to establish WP:NOTE for this. It may be a case where "transwikiing" to wiktionary may be a good solution. --dab (𒁳) 10:29, 2 September 2009 (UTC)[reply]
- after looking into this, I come to the conclusion that the case is complex enough to justify a full article, and that transwikification is therefore not advisable. --dab (𒁳) 11:05, 2 September 2009 (UTC)[reply]
  - After looking into this article which is based around a lexicographic pattern, this article meets the criteria for the wiktionary, and fails to meet that for the wikipedia, so copying this information to the wiktionary, followed by removal of the article here is essential whether it is 'advisable' or not.- (User) Wolfkeeper (Talk) 13:21, 2 September 2009 (UTC)[reply]
    - um, wheredo you get the idea that articles on lexicography "fail to meet the criteria for the wikipedia"? Wikipedia's scope is universal. We canrry articles on anything provided only the topic is notable wthin its respective field. In the case of lexicographic topics, "notable" within lexicographic literature. Your suggestion that "lexicographic, therefore transwiki" based on a clear misconception of Wikipedia's scope. --dab (𒁳) 17:33, 2 September 2009 (UTC)[reply]
      - Where do you get the idea that it is allowed? There is NO policy that it is allowed, and the scope of the wikipedia is not universal. There are long lists of things that are not permitted here, including dictionary articles. Please give an example of another encyclopedia that actually has articles on specific suffixes. There are none at all that I am aware of, not one- Encyclopedia Britannica certainly doesn't. All the references from all of the suffix articles in the wikipedia (and there are few of those) contain references to dictionaries; that's because dictionaries nearly always permit suffixes and prefixes. 'THE WIKIPEDIA IS NOT A DICTIONARY- (User) Wolfkeeper (Talk) 18:06, 2 September 2009 (UTC)[reply]

The above discussion is preserved as an archive of the proposal. Please do not modify it. Subsequent comments should be made in a new section on this talk page. No further edits should be made to this section.

Cistromics

Consider adding cistromics to this page - the 'omics technique that measures genome wide DNA sequence occupancy by a specific trans-acting transcriptional regulatory factor - either a transcription factor or enzyme. — Preceding unsigned comment added by 128.249.96.13 (talk) 15:41, 1 March 2018 (UTC)[reply]

False etymology

The statement "The association with chromosome in molecular biology is by false etymology" looks dubious to me. Since the modern productivity of -omics in medical and biological sciences seems to bear little relationship to classical Greek grammar, it will be difficult to say there was not a particular route. I cannot see a source which says the combination of chromosome and gene to give genome did not happen, and plenty which say it did. The -ics extension to genomics is a standard adaptation and all the others seem to then be modelled on that. 09:50, 24 June 2020 (UTC) — Preceding unsigned comment added by 2A00:23C6:1482:A100:F4C4:EABC:3035:E0F6 (talk)

-omics VS Omics

Is this suffix really talked about in general terms as "Omics", or is it just a suffix? It seems to me that the more appropriate title (some 12 years later) is in fact -omics. I don't know much about the topic, and am a mere passer-by, seeking to make suffix articles consistent. Please inform me if I am on the wrong track. — HTGS (talk) 00:37, 26 June 2021 (UTC)[reply]

Orphaned references in Omics

I check pages listed in Category:Pages with incorrect ref formatting to try to fix reference errors. One of the things I do is look for content for orphaned references in wikilinked articles. I have found content for some of Omics's orphans, the problem is that I found more than one version. I can't determine which (if any) is correct for this article, so I am asking for a sentient editor to look it over and copy the correct ref content into this article.

Reference named "Berg2020":

From Plant microbiome: Berg, Gabriele; Daria Rybakova, Doreen Fischer, Tomislav Cernava, Marie-Christine Champomier Vergès, Trevor Charles, Xiaoyulong Chen, Luca Cocolin, Kellye Eversole, Gema Herrero Corral, Maria Kazou, Linda Kinkel, Lene Lange, Nelson Lima, Alexander Loy, James A. Macklin, Emmanuelle Maguin, Tim Mauchline, Ryan McClure, Birgit Mitter, Matthew Ryan, Inga Sarand, Hauke Smidt, Bettina Schelkle, Hugo Roume, G. Seghal Kiran, Joseph Selvin, Rafael Soares Correa de Souza, Leo van Overbeek, Brajesh K. Singh, Michael Wagner, Aaron Walsh, Angela Sessitsch and Michael Schloter (2020) "Microbiome definition re-visited: old concepts and new challenges". Microbiome, 8(103): 1–22. doi:10.1186/s40168-020-00875-0. Material was copied from this source, which is available under a Creative Commons Attribution 4.0 International License.
From Microbiome: Berg, Gabriele; Rybakova, Daria; Fischer, Doreen; Cernava, Tomislav; Vergès, Marie-Christine Champomier; Charles, Trevor; Chen, Xiaoyulong; Cocolin, Luca; Eversole, Kellye; Corral, Gema Herrero; Kazou, Maria; Kinkel, Linda; Lange, Lene; Lima, Nelson; Loy, Alexander; MacKlin, James A.; Maguin, Emmanuelle; Mauchline, Tim; McClure, Ryan; Mitter, Birgit; Ryan, Matthew; Sarand, Inga; Smidt, Hauke; Schelkle, Bettina; Roume, Hugo; Kiran, G. Seghal; Selvin, Joseph; Souza, Rafael Soares Correa de; Van Overbeek, Leo; et al. (2020). "Microbiome definition re-visited: Old concepts and new challenges". Microbiome. 8 (1): 103. doi:10.1186/s40168-020-00875-0. PMC 7329523. PMID 32605663.{{cite journal}}: CS1 maint: unflagged free DOI (link) Material was copied from this source, which is available under a Creative Commons Attribution 4.0 International License.

I apologize if any of the above are effectively identical; I am just a simple computer program, so I can't determine whether minor differences are significant or not. AnomieBOT ⚡ 12:12, 24 October 2021 (UTC)[reply]

Wiki Education assignment: Microbial Symbiosis and Microbiomes

This article was the subject of a Wiki Education Foundation-supported course assignment, between 21 August 2024 and 1 December 2024. Further details are available on the course page. Student editor(s): Cdomb90s (article contribs).

— Assignment last updated by Cdomb90s (talk) 07:14, 22 November 2024 (UTC)[reply]

A moved list

Moving here (and to Talk:List of omics topics in biology) a lengthy (and largely redundant) miscellaneous list:

Extended content

1. Genomics: Study of the genome, the complete set of genes in an organism.

2. Proteomics: Study of the proteome, the entire collection of proteins in an organism's cells.

3. Metabolomics: Study of metabolism and the function and interactions of metabolic breakdown products, or metabolites.

4. Transcriptomics: Study of the full complement of RNA in an organism's cells.

5. Lipidomics: Study of lipids and pathways involved in lipid signaling.

6. Epigenomics: Study of the chemical modifications to DNA and histone proteins that regulate gene expression without changing the DNA sequence.

7. Glycomics: Study of the glycome, the complete set of sugars, or glycans, in an organism.

8. Phenomics: Study of phenomes, the physical and biochemical traits of organisms.

9. harmacogenomics: Study of how genes affect a person's response to drugs.

10. Toxicogenomics: Study of the effects of toxic chemicals on the genome and gene expression.

11. Nutrigenomics: Study of the interactions between nutrition and genes.

12. Microbiomics: Study of microbial communities (microbiota) and their collective genomes (microbiome).

13. Viromics: Study of the viral community and their interactions within a host organism.

14. Exposomics: Study of the totality of human environmental exposures and their effects on health.

15. Connectomics: Study of neural connections in the brain.

16. Immunomics: Study of the immune system on an omic scale.

17. Interactomics: Study of the relationships and interactions between proteins and other molecules.

18. Fluxomics: Study of the rates of metabolic reactions in a biological system.

19. *Phosphoproteomics: Study of phosphorylated proteins and their roles in cell signaling and function.

20. Splicomics: Study of RNA splicing and its variations across different tissues or conditions.

21. Secretomics: Study of the secretome, the entire set of proteins secreted by a cell, tissue, or organism.

22. Degradomics: Study of the proteolytic enzymes (proteases) and their substrates.

23. Ubiquitinomics: Study of ubiquitin and ubiquitin-like protein modifications on other proteins.

24. Metallomics: Study of the role of metal ions in biological systems.

25. Redoxomics**: Study of redox states and the roles of reactive oxygen species in cellular processes.

26. Volatilomics**: Study of volatile organic compounds produced by living organisms.

27. Theranostics**: A combination of therapeutics and diagnostics, often studied at an omics level.

28. Cytomics**: Study of the cell and its functions at a molecular level.

29. Sensomics**: Study of sensory perception and the associated molecules and pathways.

30. Foodomics**: Application of omics technologies in food and nutrition research.

31. Chronomics**: Study of biological rhythms and their molecular mechanisms.

32. Peptidomics**: Study of peptides, their structures, functions, and roles in biology.

33. Ecogenomics**: Study of the genetic composition of ecological communities and their interactions with the environment.

34. Pathogenomics**: Study of the genomes of pathogens to understand their biology and interaction with hosts.

35. Nucleomics**: Study of the nuclear components of cells, including chromatin and nuclear bodies.

36. Single-cell omics**: Study of the omics data at the single-cell level to understand cellular heterogeneity.

37. Oncomics**: Study of cancer-related genes, proteins, and pathways.

38. Biomechanics omics**: Study of the mechanical properties of biological molecules and structures.

39. Symbiomics**: Study of symbiotic relationships at the molecular level.

40. Interactomics**: Study of molecular interactions in biological systems, including protein-protein, protein-DNA, and protein-RNA interactions.

41. Paleomics**: Study of ancient biological materials through omics technologies.

42. Methylomics**: Study of DNA methylation patterns across the genome.

43. Toxicoepigenomics**: Study of the effects of environmental toxins on epigenetic modifications.

44. Neurogenomics**: Study of the genetic basis of nervous system structure and function.

45. Immunopeptidomics**: Study of peptides presented by the immune system, particularly those bound to MHC molecules.

46. Phytomics**: Study of plant genomes and their interactions with the environment.

47. Autoimmunomics**: Study of the molecular mechanisms underlying autoimmune diseases.

48. Agrigenomics**: Application of genomics in agriculture to improve crop and livestock production.

49. Thermogenomics**: Study of the genetic basis of thermoregulation and heat production in organisms.

50. Biome omics**: Study of the genetic and molecular makeup of whole biomes (large ecological areas).

51. Metagenomics**: Study of genetic material recovered directly from environmental samples, bypassing the need for isolating and culturing individual species.

52. Astrobiomics**: Study of potential life and biological molecules in space environments.

53. Connectomics**: Study of the comprehensive maps of neural connections in the brain.

54. Kinomics**: Study of kinases and their roles in cellular signaling.

55. Phenomics**: Study of phenotypes on an omics scale, capturing the physical and biochemical traits of organisms.

56. Glycoproteomics**: Study of glycoproteins, which are proteins with carbohydrate groups attached.

57. Nutriproteomics**: Study of the effects of nutrients on the proteome.

58. Epitranscriptomics**: Study of chemical modifications on RNA molecules and their impact on gene expression and function.

59. Glycolipidomics**: Study of glycolipids, complex molecules consisting of carbohydrates and lipids.

60. Endocrinomics**: Study of the endocrine system and hormone-related omics data.

61. Psychomics**: Study of the molecular basis of psychological and psychiatric conditions.

62. Interactomics**: Comprehensive study of all molecular interactions in a cell.

63. Distributomics**: Study of the distribution patterns of molecules within cells or organisms.

64. Pangenomics**: Study of the complete set of genes within a species, including core and accessory genes.

65. Adaptomics**: Study of adaptive changes in organisms at the molecular level.

66. Seromics**: Study of serum proteins and metabolites.

67. Neuroproteomics**: Study of the proteome of the nervous system.

68. Phytochemomics**: Study of the complex chemical compounds in plants.

69. Agingomics**: Study of the molecular and genetic factors involved in aging.

70. Radiogenomics**: Study of the relationship between genetic variation and response to radiation therapy.

71. Immunogenomics**: Study of the genetic basis of immune system function and diversity.

72. Biogeomics**: Study of the genomic basis of biodiversity and ecosystem function.

73. Virogenomics**: Study of viral genomes and their interactions with host organisms.

74. Dermomics**: Study of the molecular and genetic aspects of skin biology.

75. Allergomics**: Study of the molecular and genetic basis of allergic reactions.

76. Plantomics**: Comprehensive study of plant biology using omics approaches.

77. Oceanomics**: Study of marine organisms and ecosystems using omics technologies.

78. Parasite genomics**: Study of the genomes of parasitic organisms.

79. Aquaculture omics**: Application of omics technologies to improve aquaculture practices.

80. Epigenomics**: Study of the complete set of epigenetic modifications on the genetic material of a cell.

81. Pathophysiomics**: Study of the molecular and cellular mechanisms of disease processes.

82. Quantum omics**: Study of quantum mechanical properties of biological molecules and their influence on biological functions.

83. Thermogenomics**: Study of the genetic basis of temperature regulation in organisms.

84. Chronomics**: Study of biological rhythms and their molecular bases.

85. Syntheomics**: Study of synthetic biology approaches using omics data to design and construct new biological parts, devices, and systems.

86. Holobiont omics**: Study of the omics data of a host and its associated microbiota as a single ecological unit.

87. Ecophysiomics**: Study of the interactions between the physiological functions of organisms and their environment at an omics level.

88. Resistomics**: Study of antibiotic resistance genes and their mechanisms.

89. Aptameromics**: Study of aptamers, short DNA or RNA molecules that bind to specific targets, and their applications.

90. Virulomics**: Study of virulence factors and mechanisms of pathogenicity in microbes.

91. Mycomics**: Study of fungal genomes and their biological functions.

92. Photomics**: Study of the interaction between light and biological systems.

93. Nanonics**: Study of nanomaterials and their interactions with biological systems using omics approaches.

94. Allergenomics**: Study of allergens and the molecular basis of allergic responses.

95. Xenobiomics**: Study of the effects of foreign substances (xenobiotics) on biological systems.

96. Physiomics**: Study of the physiological aspects of biological systems at an omics scale.

97. Psychogenomics**: Study of the genetic and molecular basis of psychological traits and disorders.

98. Methylomics**: Study of DNA methylation patterns and their effects on gene expression.

99. Cardiomics**: Study of the molecular and genetic basis of cardiovascular function and diseases.

100. Degradomics**: Study of the proteolytic processes and protein degradation pathways.

101. Astrobiomics**: Study of the potential for life and biological processes in extraterrestrial environments.

102. Geonomics**: Study of the genetic basis of geological and geobiological processes.

103. Radiomics**: Study of the quantifiable features of medical images and their association with clinical outcomes.

104. Biome omics**: Study of the genetic, molecular, and ecological interactions within biomes.

105. Allosteromics**: Study of allosteric sites and their regulatory roles in protein function.

106. Biothermodynamics**: Study of the thermodynamic properties of biological molecules and systems using omics approaches.

107. Anthropomics**: Study of human diversity and evolution using omics data.

108. Connectomics**: Study of neural connections within the brain and nervous system.

109. Autophagomics**: Study of the autophagy process at an omics level.

110. Photogenomics**: Study of the effects of light on gene expression and cellular functions.

111. Aeroomics**: Study of airborne biological particles and their impact on health and environment.

112. Epitranscriptomics**: Study of chemical modifications on RNA molecules and their impact on gene expression and function.

113. Radiogenomics**: Study of the relationship between genomic features and response to radiation therapy.

114. Nephromics**: Study of the kidneys and their functions at a molecular level.

115. Dermatomics**: Study of the skin and its molecular composition and functions.

116. Xenomics**: Study of the effects and interactions of foreign genetic material introduced into an organism.

117. MicroRNAomics**: Study of microRNAs and their roles in regulating gene expression.

118. Synthetic omics**: Study and design of synthetic biological systems using omics data.

119. Environomics**: Study of the interactions between organisms and their environment using omics technologies.

120. Paleomics**: Study of ancient biological materials and their molecular information.

121. Regulomics**: Study of regulatory networks and their roles in gene expression.

122. Pathobiomics**: Study of disease pathways and mechanisms at an omics scale.

123. Evolvomics**: Study of evolutionary processes and patterns using omics data.

124. Thermobiomics**: Study of the effects of temperature on biological molecules and systems.

125. Circadiomics**: Study of circadian rhythms and their molecular underpinnings.

126. Nanomics**: Study of nanoscale biological processes and materials.

127. Metaproteomics**: Study of the collective protein content in environmental samples.

128. Biomechanics omics**: Study of the mechanical properties of biological molecules and systems.

129. Cancer omics**: Study of the molecular basis of cancer, including oncogenomics and cancer proteomics.

130. Synthetic biology omics**: Application of omics technologies to design and construct new biological parts, devices, and systems.

131. Gutomics**: Study of the gut microbiome and its interactions with the host.

132. Nutrigenomics**: Study of the relationship between nutrition and the genome.

133. Plant omics**: Comprehensive study of plant biology using omics approaches.

134. Infectomics**: Study of the molecular mechanisms of infectious diseases.

135. Microbiomics**: Study of microbial communities and their functions.

136. Sexomics**: Study of the molecular basis of sex differences in biology.

137. Biomechanomics**: Study of the interaction between mechanical forces and biological systems.

138. Neurogenomics**: Study of the genetic basis of neurological functions and disorders.

139. Omeomics**: Study of the relationships and interactions between different omes (genome, proteome, etc.).

140. Immunotranscriptomics**: Study of the transcriptome of immune cells.

141. Nervomics**: Study of the nervous system and its molecular components.

142. Embryomics**: Study of the molecular and genetic processes during embryonic development.

143. Agingomics**: Study of the molecular basis of aging.

144. Photoproteomics**: Study of proteins involved in light sensing and response.

145. Hematomics**: Study of the molecular composition and function of blood.

146. Biophotonics omics**: Study of the interaction of light with biological materials at an omics level.

147. Anatomics**: Study of the molecular basis of anatomical structures.

148. Mycobiomics**: Study of fungal communities and their interactions with the host or environment.

149. Pathogenomics**: Study of the genomes of pathogens.

150. Symbiomics**: Study of symbiotic relationships at the molecular level.

151. Aquomics**: Study of aquatic organisms and their molecular biology.

152. Bacteriomics**: Study of bacteria and their genomes.

153. Biomarkeromics**: Study of biomarkers using omics technologies for disease detection and monitoring.

154. Cardiomics**: Study of the cardiovascular system at a molecular level.

155. Cellomics**: Study of cell structure, function, and behavior using high-throughput methods.

156. Chemogenomics**: Study of the genomic response to chemical compounds.

157. Cryomics**: Study of biological molecules and systems under low-temperature conditions.

158. Distributomics**: Study of the spatial distribution of molecules within cells or tissues.

159. Ecosystem omics**: Study of entire ecosystems using omics approaches.

160. Energetics omics**: Study of the energy flow and metabolism in biological systems.

161. Gastroomics**: Study of the gastrointestinal system and its microbiota.

162. Genetherapeutics omics**: Study of gene therapy approaches and their effects at an omics level.

163. Hormonomics**: Study of hormones and their molecular pathways.

164. Hydratomics**: Study of the hydration state of biological molecules and systems.

165. Inflamomics**: Study of inflammation and its molecular pathways.

166. Metalloproteomics**: Study of metalloproteins and their roles in biology.

167. Morphomics**: Study of the shape and structure of organisms and their molecular basis.

168. Nervomics**: Study of the nervous system and its molecular composition.

169. Neurochemomics**: Study of the chemical processes in the nervous system.

170. Nutriomics**: Study of the interactions between nutrients and the genome.

171. Ocularomics**: Study of the eye and its molecular biology.

172. Optogenomics**: Study of the genetic basis of light perception and response.

173. Organomics**: Study of specific organs at a molecular level.

174. Parasitomics**: Study of parasites and their interactions with hosts.

175. Pathophenomics**: Study of disease phenotypes and their molecular basis.

176. Pharmacomics**: Study of drugs and their effects on the genome and proteome.

177. Polyomics**: Study of the complex interactions between multiple omes (genome, proteome, etc.).

178. Psychomics**: Study of the molecular basis of psychological traits and disorders.

179. Pulmonomics**: Study of the lungs and respiratory system at a molecular level.

180. Reproductomics**: Study of reproductive systems and their molecular biology.

181. Respiromics**: Study of the respiratory system and its molecular functions.

182. Selenomics**: Study of the role of selenium in biology.

183. Sexomics**: Study of the molecular basis of sex differences and sexual development.

184. Spatiomics**: Study of the spatial distribution of molecules within biological systems.

185. Sportomics**: Study of the molecular basis of sports performance and physical activity.

186. Stemcellomics**: Study of stem cells and their molecular properties.

187. Stromomics**: Study of the stroma, the supportive tissue in organs, and its molecular components.

188. Subcellomics**: Study of the molecular composition of subcellular compartments.

189. Synaptomics**: Study of synapses and their molecular components.

190. Toxinomics**: Study of toxins and their effects on the genome and proteome.

191. Traumomics**: Study of the molecular basis of trauma and injury.

192. Vascularomics**: Study of the vascular system and its molecular biology.

193. Virosomomics**: Study of the structure and function of viral particles.

194. Zoonomics**: Study of zoonotic diseases and their molecular basis.

86.172.165.182 (talk) 13:43, 5 January 2025 (UTC)[reply]